Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANEVYANNMEISCKAANGKSIAAFPDVCFTPPQAPPTPLGVPIPYPNTGLSKDTTKGTRTIRITRKEVMLKNKSYYKTSYGDEPGRAPKKGIVTSKIKGKVYFTSWSMNVKFESKNVVRHLDLTTHNHASFPGNTPVWPYLDQATVDAGGGPCSNEVKKEKKDCADFKPHGSKDACAGLGAGKPSGKKTSNEADRLADKV-AARKCLTARRCALQPYKPNSCCPQQTAHHLIEASALHDKGRGGKGSVPLKGISNYSENKAPCVCAEGVNQNVGTHGLMHTFQSAAAAKSRSGTLQLSNGSSISAKKTTYGTAKRQSMAAMGKVFPQSKCSKECLSAQLDNYHKQCGINARTPIKAVETGQTDVTAATQAIKTRNARLGATRSRVR |
| 4XGC Chain:A ((38-388)) | ------------PCREREFENIYAFLEGKIQDQC-----MYVS-GVPGTGKTATVTGVIRT---------LQEYLEINGMRLTEPRQAYVQIYKQLTGKTVSWEQAHALLEKRTTVLLVDELDILCNRRQDVVYNLLDWPTKLVVVTIANTMDLPERLGLTRLTF---QPYSHKQLQEIVTARLGKGEAVQLVARKVAAVSGDARRALDICRRATEIADTAAV-KCVTMLHVQQALAEMIAS---AKVQAIRNCSRMEQIFLQAIAAEVTRTGVEETTFMGVYQQVETIAAFMGV----------------------------TFPPPGRALRLCSKLGAER-----------LIISEHSRNDLFQKILLNVSADDIHYALRV---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XGC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 82056 for 2381 contacts (34.5/contact) +
2D Compatibility (PS) -32397 + (NN) 2668 + (LL) 4960
1D Compatibility (HY) -2800 + (ID) 2450
Total energy: 52037.0 ( 21.86 by residue)
QMean score : 0.077
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