Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLDWTCKHHADLTLKELYALLQLRTEVFVVEQKCPYQ---E-VDGLDLVGDTHHLMAWR-DGQLLAYLRLLDPVRHEGQVVIGRVVSSSAARGQGLGHQLMERALQAAERLWLDTPVYLSAQAHLQAYYGRYGFVAVTEVYLEDDIPHIGMRRA
3GY9 Chain:A ((6-134))
---------IERVNDFDGYNWLPLLAKSSQEGFQLVERMLRNRREESFQEDGEAMFVALSTTNQVLACGGYMKQSGQARTGRIRHVYVLPEARSHGIGTALLEKIMSEAFL-TY-DRLVLY-SEQADPFYQGLGFQLVSGEKITHTLDKTAFADS
General information:
TITO was launched using:
RESULT:
Template:
3GY9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73253 for 834 contacts (-87.8/contact) +
2D Compatibility (PS) -13244 + (NN) -181 + (LL) 896
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -91232.0 ( -109.39 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_3GY9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GY9-query.scw
PDB file :
Tito_Scwrl_3GY9.pdb
: