Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIQHRTQDAIRTLTAAFAPFDCLIQAT-RKGNFSFTIVDQHGVACHSERLYPEQYD--DSGKMEEVINRVRKKTLAA
1YBX Chain:A ((55-113))
--------RDMERVQEELKEKT--VEASAGGGAVTVVA-TGRKD-IKEITIKPEVVDPDDVEMLQDLILAAVNEALRK
General information:
TITO was launched using:
RESULT:
Template:
1YBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7788 for 293 contacts (-26.6/contact) +
2D Compatibility (PS) -6106 + (NN) -1341 + (LL) 1388
1D Compatibility (HY) -2800 + (ID) 350
Total energy: -16997.0 ( -58.01 by residue)
QMean score : 0.284
(partial model without unconserved sides chains):
PDB file :
Tito_1YBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBX-query.scw
PDB file :
Tito_Scwrl_1YBX.pdb
: