Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPDTLRHARVIILGSGPAGYSAAVYAARANLKPLLITGMQA-----GGQLTTTTEVDNWPGDPHGLTGPALMQRMQEHAERFETEIVFDHIHAVDLAGKPFTLRGDNGTYTCDALIVATGASARYLGLPSE----QAFMGKGVSACATCDGF--FYRNREVAVIGGGNTAVEEALYLANIASRVTLVHRRETFRAEKILQDKLQARVAEGKIVLKLNAEVDEVLG----DTMGVTGVRLKT-RDGGSEEIAVDGMFVAIGHTPNTSLFEGQLAL-KDGYLVVNGGREGNATATNVPGVFAAGDVADHVYRQAITSAGAGCMAALDVERYLDSL |
| 1VDC Chain:A ((8-325)) | ------NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQ---QRALSNPKIDVIWNSSVVEAYGDGERDVLG--GLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPG----TTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQEI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -226346 for 2671 contacts (-84.7/contact) +
2D Compatibility (PS) -32915 + (NN) -11637 + (LL) 680
1D Compatibility (HY) -29200 + (ID) 7450
Total energy: -306868.0 ( -114.89 by residue)
QMean score : 0.553
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