Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRFEIAFSGQLVAGARPEVVKANLAKLFQADAQRIELLFSGRRVVIKNNLDAASAEKYRSVLERAGAIAVVAEMEVEEVVMAPPPAQTTPVEAPQTRAATGTSAPAGRLQVAPRDGYMAAFAEVDAPDFGLAPVGADLQDAKAEAEAPKLDLSRFSVAPVGSDMGQARSEPAAPAPDTSHLRLQD
4YFK Chain:C ((306-344))
--------TGELICAANMELSLDLLAKLSQSGHKRIETLFT-------NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK
General information:
TITO was launched using:
RESULT:
Template:
4YFK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10542 for 154 contacts (-68.5/contact) +
2D Compatibility (PS) -4248 + (NN) -2076 + (LL) 1676
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -18440.0 ( -119.74 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_4YFK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YFK-query.scw
PDB file :
Tito_Scwrl_4YFK.pdb
: