Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLAQFTPSALADLANCVLRIPLALQQPSSVAMTLPSLTSFMPHFGAPALLLLQLLAALPATAAETDATPLRFSVMESWSMPLVRLQR-GQPIDGIVYDITRSLARQVGRKALYHPYPRGRIEQAMNAGEIDVRCYISPAWLSHDFPGYRWSVALLVQRDILVAREGFA-PIPEALPAQRIGTVLGYSYPR-LQALFDIGRLRRDDARTQDLVLEKLRAGRYRYAVSHQLSLHWSNRQAPGQP------PLQEAAQLE-ETAVSCMVRDSAEVPVEAILKTFEEMKRSGEIEEILQRYR |
3KZG Chain:A ((20-245)) | --------------------------------------------------------------------NLTIGTS-KFNPPFEVWSGNNSSLYGFDIDLMQEICRRLHATCTFEAYIFDDLFPALKNREVDLVI-ASMIITDERKKHFIFSLPYMESNSQYITTVDSKISTFDDLHGKKIGVRKGTPYARQVLSENRN--NQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KZG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -41922 for 1521 contacts (-27.6/contact) +
2D Compatibility (PS) -20737 + (NN) 4036 + (LL) 5960
1D Compatibility (HY) 4400 + (ID) 600
Total energy: -48863.0 ( -32.13 by residue)
QMean score : 0.059
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