Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------MLAELFAVMAPVLFGAGVGYVWVRLGHAYPTEFVSRIVFNIGSP-CLILATLAHTRVDLHSFGRMALASALICVCMAALGWAAARLGRQEWQVLVPAYSF--------PNVGNM--------GLPVCLYAFGEAGMTLAVAFYLIMS-------------IGNFSLGV---------FWMSGERSWRSLLGNPILLSVLLAL------LLM-----------------------------GLDLQLPRWMANTVDLMAGLTIPLM-------------------LITLGVSLASIRPRQLGNGFFYG------GLRLLLGALVGWSVALALQLPPLAQGVLVVQSSMPVAVFNYLYALR-GNRSPDQVASLVLCSTLLSFAFIPLL---------L-TWWLPALR---------------------- |
| 4N9N Chain:A ((11-438)) | NLNLIDMKLFHHYCTKVWPTITAAKVS------GPEIWRDYIPELAFDYPFLMHALLA-FSATHLSRTETGLEQYVSSHRLDALRLLREAVLEISENNTDALVASALILIMDSLANASVDNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYVDSMSPSAWIFHVKGAATILTAVWPLSERSKFHNIISVDLSDLGDVINPDVGTITELVCFDESIADLYPVGLDSPYLITLAYLDKLHREKNQGDFILRVFTFPALLDKTFLALLMTGDLGAMRIMRSYYKLLRGFATEVKDKVWFLEGVTQVLPQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4N9N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -246551 for 1840 contacts (-134.0/contact) +
2D Compatibility (PS) -29719 + (NN) -7028 + (LL) 960
1D Compatibility (HY) -12400 + (ID) 3000
Total energy: -297738.0 ( -161.81 by residue)
QMean score : 0.133
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