Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLAGSFAALFLSLSAQAADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSS--AELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK
1QKS Chain:A ((507-546))
------------------------------------------------------------------------------------------QGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFNVYNTMTDTY-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1QKS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7132 for 184 contacts (-38.8/contact) +
2D Compatibility (PS) -4249 + (NN) -3919 + (LL) 4408
1D Compatibility (HY) -2800 + (ID) 450
Total energy: -14142.0 ( -76.86 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_1QKS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QKS-query.scw
PDB file :
Tito_Scwrl_1QKS.pdb
: