Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLIKTILSTNAGAGLAILRIVTGLTLMSHGSQKLFGMFGGAGLNGMAQWFESIGLTPGYLLATLAGSAEFFGGLAL---VIGLLVRPASVVVGFTMIVAIFSVHIGNGFFITDN-GYEYALTLLMISVALLIDGAGKFSLDGKLSR
3Q87 Chain:A ((1-125))
MKPFLLGLLKCKRCSFMTKLILECEKAESNDVDVKIFN----------KHMFTENG---GERLKSLVNSLRDFHGRELSEQDISSFVENPGD--DEKIKEFLFGIDVVEGSLRCDMCGLIYPIK-----------GSIVETVDTVESK
General information:
TITO was launched using:
RESULT:
Template:
3Q87.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90381 for 833 contacts (-108.5/contact) +
2D Compatibility (PS) -12805 + (NN) -4080 + (LL) 2124
1D Compatibility (HY) -3600 + (ID) 1250
Total energy: -109992.0 ( -132.04 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_3Q87.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q87-query.scw
PDB file :
Tito_Scwrl_3Q87.pdb
: