Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPC-DGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRY------AEQGPEGLLQGKRAFVLTARGGIYA-----GGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
3LT5 Chain:A ((1-205))
MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRP--LLRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEGEESG--SFEDSCDEAEQRL------------------
General information:
TITO was launched using:
RESULT:
Template:
3LT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113338 for 1478 contacts (-76.7/contact) +
2D Compatibility (PS) -20596 + (NN) -4226 + (LL) 1188
1D Compatibility (HY) -14000 + (ID) 3900
Total energy: -154872.0 ( -104.78 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_3LT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LT5-query.scw
PDB file :
Tito_Scwrl_3LT5.pdb
: