Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLFADAPLTLPDADLRYLPHWLDAPLASAWLLRLEQETPWEQPIL---RIHGEEHPTPRLVAWYGDPDAAYRYSGQVHRPLPWTALLGEIRERVEREVGQRVNGVLLNYYRDGQDSMGWHSDDEPELRRDPLVASLSLGGSRRFDLRRK---GQT---RIAHS-LELTHGSLLVMRGATQHHWQHQVAKTRRSCMPRLNLTFRLVYPQP
3RZJ Chain:A ((33-204))
----------------------------------LEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR---PSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKI----
General information:
TITO was launched using:
RESULT:
Template:
3RZJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37830 for 1111 contacts (-34.1/contact) +
2D Compatibility (PS) -16679 + (NN) -3942 + (LL) 2452
1D Compatibility (HY) -10400 + (ID) 3400
Total energy: -69799.0 ( -62.83 by residue)
QMean score : 0.355
(partial model without unconserved sides chains):
PDB file :
Tito_3RZJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RZJ-query.scw
PDB file :
Tito_Scwrl_3RZJ.pdb
: