Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQTDKHYFGTLLAQTSRAWRAELDRRLSHLGLSQARWLVLLHLARHR-DSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIAASVRNDVLTGIDESEQALCQQVLLRILANLENR
4L9N Chain:A ((5-139))
--------YSYLFRMISHEMKQKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTR-KNIGLTTSGIKLVEVFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ--
General information:
TITO was launched using:
RESULT:
Template:
4L9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73631 for 809 contacts (-91.0/contact) +
2D Compatibility (PS) -14898 + (NN) -8699 + (LL) 812
1D Compatibility (HY) -8400 + (ID) 1700
Total energy: -106516.0 ( -131.66 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_4L9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L9N-query.scw
PDB file :
Tito_Scwrl_4L9N.pdb
: