Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNLYTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTRE--PFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEETSAVLDSFGLKISPRMGEPGDYLIERAFVEK
3FPK Chain:A ((5-228))
-ADWVTGKVTKVQNWTDALFSL-TVHAPINPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPNLEFYLVTVPQGKLSPRLAALKPGDEVQVVSDASGFFVLDEVPDCETLWMLATGTAIGPYLSILQYGQDVARFKNLVLVHAARFAADLSYLPLMLEL--QQRYEG-----KLRIQTVVSRENVPGSLTGRVPALIENGELEKAVGL-PMDKETSHVMLCGNPQMVRDTQQLL--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FPK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139077 for 1805 contacts (-77.1/contact) +
2D Compatibility (PS) -24021 + (NN) -9090 + (LL) 1868
1D Compatibility (HY) -21200 + (ID) 4050
Total energy: -195570.0 ( -108.35 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_3FPK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FPK-query.scw
PDB file :
Tito_Scwrl_3FPK.pdb
: