Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAMAQAAGILGFKML---DVKPADGTLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWKFDCHATVDDKPVCSAEI--ICAERKL
3DP2 Chain:A ((14-159))
---IEHILQILPHRYPMLLVDRITELQ-ANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE-
General information:
TITO was launched using:
RESULT:
Template:
3DP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114033 for 1048 contacts (-108.8/contact) +
2D Compatibility (PS) -14973 + (NN) -3876 + (LL) 720
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -152512.0 ( -145.53 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_3DP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DP2-query.scw
PDB file :
Tito_Scwrl_3DP2.pdb
: