Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD
4DZ2 Chain:A ((10-113))
----LKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGAGGAGGVIPPNATLVFEVELLDV-----
General information:
TITO was launched using:
RESULT:
Template:
4DZ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59823 for 769 contacts (-77.8/contact) +
2D Compatibility (PS) -10448 + (NN) 5914 + (LL) 328
1D Compatibility (HY) -7600 + (ID) 2650
Total energy: -74279.0 ( -96.59 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_4DZ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DZ2-query.scw
PDB file :
Tito_Scwrl_4DZ2.pdb
: