Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIEKHNIKLATFIAALFYDLSTQKQVRIPTQIEKRDREL----------YELVKKSKRPVALLVDETHDLNGHTLTGLKRL--LELAEDDSGRRR-----LSIVLAGHPKLCNDLRRPTMEEIGYRTDIFELQEKMQSAGLPV
3N4Q Chain:A ((155-271))
----RQSVQSSTLIRVLFYHTPDQNHIEQPFYLMGRDKALAVEQFISRFNSGYIKASQELVSYTIKLSHDPIEYLLEQIQNLHR------------SDDLIIAVIMATY--LCDDI----------------------------
General information:
TITO was launched using:
RESULT:
Template:
3N4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3847 for 329 contacts (-11.7/contact) +
2D Compatibility (PS) -8167 + (NN) 610 + (LL) 3368
1D Compatibility (HY) -7200 + (ID) 1050
Total energy: -16286.0 ( -49.50 by residue)
QMean score : 0.120
(partial model without unconserved sides chains):
PDB file :
Tito_3N4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N4Q-query.scw
PDB file :
Tito_Scwrl_3N4Q.pdb
: