Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLHAAAVGPSVLPDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYAGQRKGSASTSATGEAAIRETVAAALAIARHTSEDECAGLADAALMAREL-PELDLYH--PWSLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRVYGNSHGFIGGYASTRHSLSCVMIAEGEGQ-MQRDYWYDVNRRGEALASAESIGRRAAERAASRLGARPVQTAEVPVLFAPEIAVGLFGHFLGAISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSYVLGTYSGRKLGLPSTANAGGVHNLFVSHGDEDQAALIRRMERGLLVTELMGQGVNLVTGDYSRGAAGYWVENGEIQFPVQEVTIAANLRDLFRRIVAVGKDIERRGNLHTGSVLVESMMVAGR |
| 1VPB Chain:A ((14-451)) | -----------ITDENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRD--MDRLQQASEGGLSLSLYVDGRYGSISTNRLNRKELETFIKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFASLNPDDKIEMAKAVAEEALGKDERII-SVGSSYGDGEDFAYRLISNGFEGETKSTWYSLSADITIRGEGEARPSAYWYESSLYMNDL-IKKGIGQKALERVLRKLGQKKVQSGKYTMVVDPMNSSRLLSPMISALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDNEGIATERRSIFDKGVLNTYFIDTYNAKKMGVDPTISG--SSILVMETGDKNLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIEGFLIENGKLTQPVSEMNVTGNLITLWNSLVATGNDPRLNSSWRIPSLVFEGVDFSGL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VPB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -219815 for 3590 contacts (-61.2/contact) +
2D Compatibility (PS) -45247 + (NN) -8605 + (LL) 480
1D Compatibility (HY) -22400 + (ID) 6150
Total energy: -301737.0 ( -84.05 by residue)
QMean score : 0.444
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