Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNGLPMNLIWFRCDLRTTDNSALLAAADGRPCLALYLLSPAQWREHDDAPCKVDFWLRNLGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDPSSLGLFAGVDYPRPMVDLKASRERALAAFRNLPPRDGRA |
2J08 Chain:A ((5-390)) | -------LVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLK---TTPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVPEAARRL-KAKAVYALTSHTPYGRYRD-------GRVRE-ALPVPLHLLPAPHLLPPDLPRA---YRVYTPFSRLYRGAAPPLPPPEALPKGPE------EGEIPREDPGLPLPE--------PGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFALGVLSPR------LAAWEAERRGGE-GARKWVAELLWRDFSYHLLYHFPWMA-ERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPE--------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J08.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -132343 for 3272 contacts (-40.4/contact) +
2D Compatibility (PS) -41277 + (NN) -12411 + (LL) 4760
1D Compatibility (HY) -21200 + (ID) 7450
Total energy: -209921.0 ( -64.16 by residue)
QMean score : 0.444
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