Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAISFRPMTEADLDAVLKIEYAAFSHPWTRGIFSEGL---KNYHCWLMFEGSQQVGHGVI------QII-------------LDEAHLLNITVKPESQGRGLGLRLLEHLMREAAGHQARECFLEVRASNQAAYRLYERYGFNEIGRRRDYYPAVGGREDALVMACTLFD
4J3G Chain:A ((22-185))
--MTLLIRHATEADLPALLAIYNDAVEN--TLAIWNETLVDLENRHQWL--ENRNRDGFPVLVAEREGQVVGYASYGPFRPFEGFRHSSELSVYVASNARGGGIGRTLLAELIEEARERKVHVLIAGIEAGNAASIALHRSQGFEECGTLKQVGQKFGRWLDLLFMQKIL--
General information:
TITO was launched using:
RESULT:
Template:
4J3G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75034 for 933 contacts (-80.4/contact) +
2D Compatibility (PS) -15406 + (NN) -6609 + (LL) 592
1D Compatibility (HY) -10400 + (ID) 2250
Total energy: -109107.0 ( -116.94 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_4J3G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J3G-query.scw
PDB file :
Tito_Scwrl_4J3G.pdb
: