Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRPLVAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAE-NAEVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAAGS
4Y8F Chain:A ((4-248))
MRTPIIAGNWKMHYTIDEAVKLVEELKPLVKDAKCEVVVCPTFVCLDAVKKAVEGTNIKVGAQNMHFEE-KGAFTGEIAPRMLEAMNIDYVIIGHSERREYFNETDETCNKKVKAAFAHNLTPILCCGETLEQRENGTTNDVIKAQITADLEGLTKEQAEKVVIAYEPIWAIGTGKTATSDQANETIAAIRAMVAEMFGQEVADKVRIQYGGSVKPNTIAEQMAKSDIDGALVGGASLVAADFAQI------
General information:
TITO was launched using:
RESULT:
Template:
4Y8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151292 for 2060 contacts (-73.4/contact) +
2D Compatibility (PS) -26763 + (NN) -12543 + (LL) 452
1D Compatibility (HY) -19200 + (ID) 5500
Total energy: -214846.0 ( -104.29 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_4Y8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y8F-query.scw
PDB file :
Tito_Scwrl_4Y8F.pdb
: