Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLSHRPAETGDLETVAGFPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQLGYQPRAIAERHDPDGRRVALIQMDKPLEP
4KUB Chain:A ((3-161))
MQLSHRPAETGDLETVAGFPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQLGYQPRAIAERHDPDGRRVALIQMDKPLE-
General information:
TITO was launched using:
RESULT:
Template:
4KUB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119789 for 1234 contacts (-97.1/contact) +
2D Compatibility (PS) -17245 + (NN) -10938 + (LL) -140
1D Compatibility (HY) -22400 + (ID) 7950
Total energy: -178462.0 ( -144.62 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_4KUB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KUB-query.scw
PDB file :
Tito_Scwrl_4KUB.pdb
: