Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEHIVNVTDASFEQDVLKADGPVLVDYWAEWCGPCKMIAPVLDEVARDYQGKLKVCKLNIDENQDTPPKYGVRGIPTLMLFKDGNVEATKVGALSKSQLAAFLDANI
1SKW Chain:B ((3-107))
---KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL
General information:
TITO was launched using:
RESULT:
Template:
1SKW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81138 for 776 contacts (-104.6/contact) +
2D Compatibility (PS) -11419 + (NN) -5283 + (LL) 284
1D Compatibility (HY) -14800 + (ID) 3800
Total energy: -116156.0 ( -149.69 by residue)
QMean score : 0.782
(partial model without unconserved sides chains):
PDB file :
Tito_1SKW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SKW-query.scw
PDB file :
Tito_Scwrl_1SKW.pdb
: