Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPRTPHLLAIQSHVVFGHAGNAAAVFPMQRIGINVWPLNTVQFSNHTQYGRWTGQVLPPEQIPALVDGIAGIGELGNCDAVLSGYLGSAAQGRAILDVVARIKQANPRALYLCDPVMGHP--EKGCIVAPEVSDFL---LEEAAAVADYLCPNQLELDSFCDRQPNSLADCVEMARSLLARGPRAILVKHLNYPGKAGDTFEMLLVAADQAWH----LQRPLLAFPRQP---VGVGDLASGLFLSRLLLG-DDLRNAFEFTGAAVHEVLLETQACGS-------------YELELVRAQDRIAHPRVRFDAVRL |
| 2YXU Chain:A ((3-312)) | --EECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLR-LNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPE--DLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDLPSPQGSNY--LIVLGSQRR-GSVVMERIRMDIRKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDIEDPEIVVQATVL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YXU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -206220 for 2380 contacts (-86.6/contact) +
2D Compatibility (PS) -30141 + (NN) -6464 + (LL) 416
1D Compatibility (HY) -23200 + (ID) 4700
Total energy: -270309.0 ( -113.58 by residue)
QMean score : 0.475
|
|
|