Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRA-DFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKSGEE-VHKHLIINRLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIR-TDCESAKAYQRITRRILGEEVEYVEFKAKRGFFSALKGIFS
3Q9L Chain:A ((2-258))
-ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTVERLLGEERPF-------------RFIEE
General information:
TITO was launched using:
RESULT:
Template:
3Q9L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -177738 for 2265 contacts (-78.5/contact) +
2D Compatibility (PS) -26711 + (NN) -3532 + (LL) 1392
1D Compatibility (HY) -24400 + (ID) 6450
Total energy: -237439.0 ( -104.83 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_3Q9L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q9L-query.scw
PDB file :
Tito_Scwrl_3Q9L.pdb
: