Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNFKYLFVLMLAVIVFAAACGNSSSLDNQKNASNDSDSKSGGYKPKELTVQFVPSQNAGTLEAKAKPLEKLLSKELGIPVKVSVSTNYNTIVEAMKSKKVDVGFLPPTAYTLAHDQKAADLLLQAQRFGVKEDG-SAS-KELVDSYKSEILVKKDSKIKSLKDLKGKKIALQDVTSTAGYTFPLAMLKNEAGI-NATKDMKI-------------------------------VNVKGHDQAVISLLNGDVDAAAVFNDARNTVKKDQP-------NVFKDTRILKL--------------TQAIPNDTISVRPDMDKDFQEKLKKAFIDIAKSKEGHKIISEVYSHEGYTETKDSNFDIVREYEKLVKDMK |
| 3TOD Chain:A ((19-272)) | -----------------------------------------------------------------------QWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGK-CGLVPVLAE-NRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHVEQVLLH---------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TOD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -16430 for 1456 contacts (-11.3/contact) +
2D Compatibility (PS) -21293 + (NN) -4179 + (LL) 7616
1D Compatibility (HY) -400 + (ID) 1950
Total energy: -36636.0 ( -25.16 by residue)
QMean score : 0.346
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