Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVVACSVIGAALAIGLATLGAAIGQGIAVSRATEIIGKNPNAKKEVMGGLFLGLLMIVALMLFALAIAVILLWVNPFI
4BEM Chain:J ((24-99))
-DVIKGFSALGIGLAM-VAGVGPGIGQGFAAGKGAEAVGKNPTKSNDIVMIMLLGAAVAETSGIFSLVIALILLFANPFI
General information:
TITO was launched using:
RESULT:
Template:
4BEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51493 for 434 contacts (-118.6/contact) +
2D Compatibility (PS) -8078 + (NN) -4872 + (LL) 36
1D Compatibility (HY) 2800 + (ID) 350
Total energy: -61957.0 ( -142.76 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_4BEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BEM-query.scw
PDB file :
Tito_Scwrl_4BEM.pdb
: