Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPGPAAGSRARVYAEVNSLRSREYWDYEAHVPSWGNQDDYQLVRKLGRGKYSEVFEAINI-TNNERVVVKILKPV------KKKKIKREVKILENLRGGTNIIKLIDTVKDPVS---KTPALVFEYINNTDFKQLYQ---ILTDFDIRFYMYELLKALDYCHSKGIMHRDVKPHNVMIDHQQKKLRLIDWGLAEFYHPAQE-YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRREPFFHGQDNYDQLVRIAKVLGTEELYGYLKKYHIDLDPHFNDIL---GQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPVVKEQSQPCADNAVLSSGLTAAR |
| 4QNY Chain:A ((17-316)) | ----------------------------------RLDDRYLLERIIGAGSYGVVIRARDTKSDNRLVAMKRVNKEIFEEVILAKRILREIKLLAHFN-DDNIIGLRNILTPEDPENFDHFYIVMDIMET-DLKQVLRSGQELTEAHIQFFIYQALRALHIIHSAGVIHRDITPANILVNTN-CDLKICDFGLAKEE---GEYMTDYVTMRWYRAPELVMEDKDYSAQIDVWGIGCILGELLGS-RPLFQGKDRVNQLDKIVDVIGTPSEEDI-NSV---GSSAAQKYLKKKSHRPQADWRQRYP-----TASPEALDLLRHMLVFNPKRRITVLQAMRHPFLEQLHDDYALFRFDTIVDVKRAIYEE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QNY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178360 for 2201 contacts (-81.0/contact) +
2D Compatibility (PS) -29341 + (NN) -8431 + (LL) 2628
1D Compatibility (HY) -24000 + (ID) 4300
Total energy: -241804.0 ( -109.86 by residue)
QMean score : 0.679
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