Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
1N1Q Chain:A ((4-149))
-SIQQLVAVLLNRQVANWVVLYVKLHNFHWNVNGPNFFTLHEKFEELYTEASGHIDTLAERVLSIGGSPIATLAASLEEASIKEATGGESAAEMVSSVVNDFVDLVGELKVARDVADEADDEATADMLDAIEAGLEKHVWMLEAFLE
General information:
TITO was launched using:
RESULT:
Template:
1N1Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36539 for 1125 contacts (-32.5/contact) +
2D Compatibility (PS) -15879 + (NN) -8557 + (LL) 208
1D Compatibility (HY) -12400 + (ID) 3600
Total energy: -76767.0 ( -68.24 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_1N1Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N1Q-query.scw
PDB file :
Tito_Scwrl_1N1Q.pdb
: