Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-MKHMLIAGGGIGGLSAAISLRKAGFSVTLCEAASENRKTGAGILQPQNALAVLKELGVFEDCCKHGFQTEWFKTFDEQGNLLFQVSESFLDDSLPGRNN------ILRKTLNDILMKHAEAVGVDIKWGKKVVAYEETAESVTALCEDGEKMQA--DILAGFDGIHSVVRDKMLQ-----KETEKEHLGMGAWRFYIELPD-YTFE-DATFMYRSGDTQIGVVPLAQHAGYVFVLQPCTSDYWDEEDTRFDRVKEILSGFRGLDFVTKHMSKQHPVIFNKLE-----QVAVQE--PWHKG-RVIIGGDAAHAGAPTLAQGAAMAIEDAIVLAEELQNHADHETALQAYYKRRAPRALKVQNLSSEIVRR-RLKGEPGAEELIGECYAVLREGY----------------------------------------------------------------
5FN0 Chain:A ((6-460))NARQVTIIGAGLAGTLVARLLARNGWQVNLFERRPDPRIETGARGRSINLALAERGAHALRLA---GLEREVLAEAVMMRGRMVHVPGTPPNLQPYGRDDSEVIWSINRDRLNRILLDGAEAAGASIHFNLGLDSVDFARQRLTLSNVSGERLEKRFHLLIGADGCNSAVRQAMASVVDLGEHLETQPHGYKELQITPEASAQFNLEPNALHIWPHGDYMCIALPNLDRSFTVTLFLHHQSPAAQPASPSFAQLVDGHAARRFFQRQFPDLSPMLDSLEQDFEHHPTGKLATLRLTTWHVGGQAVLLGDAAHPMVPFHGQGMNCALEDAVALAEHLQSAADNASALAAFTAQRQPDALAIQAMALENYVEMSSKVASPTYLLERELGQIMAQRQPTRFIPRYSMVTFSRLPYAQAMARGQIQEQLLKFAVANHSDLTSINLDAVEHEVTRCLPPLSHL


General information:
TITO was launched using:
RESULT:

Template: 5FN0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1924 -168830 -87.75 -461.28
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : -87.75
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.435

(partial model without unconserved sides chains):
PDB file : Tito_5FN0.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5FN0-query.scw
PDB file : Tito_Scwrl_5FN0.pdb: