Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGNSIRAAVD--PNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPSLGAAAYP----VQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDG---QPIRNIVEPAVDASIALLGPRS
5EYR Chain:A ((26-217))
------------GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARAT-SVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPR-TLP--AHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYG--
General information:
TITO was launched using:
RESULT:
Template:
5EYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87701 for 1296 contacts (-67.7/contact) +
2D Compatibility (PS) -19884 + (NN) -9971 + (LL) 1948
1D Compatibility (HY) -3600 + (ID) 1600
Total energy: -120808.0 ( -93.22 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_5EYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5EYR-query.scw
PDB file :
Tito_Scwrl_5EYR.pdb
: