Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQVTDMRSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQ
2CBY Chain:A ((15-193))
--------------SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA-------
General information:
TITO was launched using:
RESULT:
Template:
2CBY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120372 for 1304 contacts (-92.3/contact) +
2D Compatibility (PS) -18801 + (NN) -8761 + (LL) 1204
1D Compatibility (HY) -24400 + (ID) 8450
Total energy: -179580.0 ( -137.71 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_2CBY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CBY-query.scw
PDB file :
Tito_Scwrl_2CBY.pdb
: