Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MDPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPVK----
1YCE Chain:A ((1-89))
MDMLFAKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFVGLLG
General information:
TITO was launched using:
RESULT:
Template:
1YCE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35591 for 457 contacts (-77.9/contact) +
2D Compatibility (PS) -8113 + (NN) 521 + (LL) 0
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -49033.0 ( -107.29 by residue)
QMean score : 0.132
(partial model without unconserved sides chains):
PDB file :
Tito_1YCE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YCE-query.scw
PDB file :
Tito_Scwrl_1YCE.pdb
: