Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQALLFLMALLLPSRAGAEEIIGGVESEPHSRPYMAYVNTFSKKGYVAICGGFLIAPQFVMTAAHCSGRRMTVTLGAHNVRKRECTQQKIKVEKYILPPNYNVSSKFNDIVLLKLKKQANLTSAVDVVPLPGPSDFAKPGTMCWAAGWGRTGVKKSISHTLREVELKIVGEKACKIFRHYKDSLQICVGSSTKVASVYMGDSGGPLLCAGVAHGIVSSGRGNAKPPAIFTRISPHVPWINRVIKGE
4K60 Chain:A ((1-226))
--------------------IIGGTECKPHSRPYMAYLEIVT-NGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF------VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQGIVSYGRSDAKPPAVFTRISHYQPWINQILQAN
General information:
TITO was launched using:
RESULT:
Template:
4K60.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161858 for 1849 contacts (-87.5/contact) +
2D Compatibility (PS) -23831 + (NN) -8205 + (LL) 1908
1D Compatibility (HY) -18000 + (ID) 6150
Total energy: -216136.0 ( -116.89 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_4K60.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K60-query.scw
PDB file :
Tito_Scwrl_4K60.pdb
: