Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSPECARAAGDAPLRSLEQANRTRFPFFSDVKGDHRLVLAAVETTVLVLIFAVSLLGNVCALVLVARRRRRGATACLVLNLFCADLLFI-SAIPLVLAVRWTEAWLLGPVACHLLFYVMTLSGSVTILTLAAVSLERMVCIVHLQRGVRGPGRRARAVLLALIWGYS-AVAALPLCVFFRVVPQRLPGADQEISICTLIWPTIPGEISWDVSFV----TLNFLVPGLVIVISYSKILQTSEHLLDARAVVTHSEITKASRKRLTVSLAYSESHQIRVSQQDFRLFRTLFLLMVSFFIMWSPIIITILLILIQNFKQDLVIWPSLFFWVVAFTFANSAL-NPILYNM--TLCRNEWKKIFCCFWFPEKGAILTDTSVKRNDLSIISG |
4PXF Chain:A ((39-326)) | -------------------------------------MLAAYMFLLIMLGFPINFL---TLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCS------CGIDYYT-PHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVK---EAAAQQQESATTQKAEKEVT---------------------RMVIIMVIAFLICWLPYAGVAFYI----FTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PXF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -278541 for 2141 contacts (-130.1/contact) +
2D Compatibility (PS) -28919 + (NN) -13791 + (LL) 6176
1D Compatibility (HY) -28400 + (ID) 3850
Total energy: -347325.0 ( -162.23 by residue)
QMean score : 0.194
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