Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYKDCIESTGDYFLLCDAEGPWGI---ILESLAILGIVVTILLLLAFLFLMRKIQDCSQWNVLPTQLLFLLSVLGLFGLAFAFIIELNQQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGCVSFS----W--TTILCIAIGCSLL-QIIIATEYV----TLIMTRGMMFVN-MTPCQLNVDF-VVLLVYVL-----FLMALTFFVSKATFCGPCENWKQH-GRLIFITVLFSIIIWVVWISMLLRGNPQFQRQPQWDDPVVCIALVTNAWVFLLLYIVPE-LCILYRSCRQECPL-QGNACPVTAYQHSFQVENQELSRA-RDSDGAEEDVALTSYGTPI-QPQTVDPTQECFIPQAKLSPQQDAGGV----- |
| 4RGL Chain:A ((8-335)) | -----------------YQPPYTITPAIVNLVAEIGEIIGRYTVLAEQNLTPRLRRENRIRTIQASLAIENNTL-----------TLEQVTAVIDG-----------KRVLGHPREIQEVRNAFATYEAMEDWDASVEGDLLAAHELLMRGLVDETGRYRSGGVGIFRGEQLVHMAPPADRVPKLMADLLDWLENTNEHPLVASCIFHYEFEFIHPFADGNGRMGRLWQTLILRN---WKPLLAYLPVETVIRDRQEDYYRVLAVADSQADA-----TPFVEFMLGALRDAVREAVSTDHQVTDQVAALIRAIGGGELSSNDLMQALGLSHRPTFRNNYLNPAMEDEWIERTQ----PDSPRSPTQRYRLTGKGQR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4RGL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -193712 for 2098 contacts (-92.3/contact) +
2D Compatibility (PS) -29279 + (NN) 229 + (LL) 5300
1D Compatibility (HY) -1600 + (ID) 2650
Total energy: -221712.0 ( -105.68 by residue)
QMean score : 0.144
|
|
|