Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSIINTSYVEITTFFLVGMPGLEYAHIWISIPICSMYLIAILGNGTILFIIKTEPSLHGPMYYFLSMLAMSDLGLSLSSLPTVLSIFLFNAPETSSSACFAQEFFIHGFSVLESSV---LLIMSFDRFLAIHNPLRYTSILTTVRVAQIGIVFSFKSMLLVLPFPFTLRSL----------------RYCKKNQLSHSYCLHQDVMKLACSDNRIDVIYGFFGALCLMVDFILIAVSYTLIL------------KTVPGIASKKEELKALNTCVSHICAVIIFYLPIINLAVVHRFA------GHVSPLINVLMANVLLLVPPLMKPIVYCVKTKQIRVRVVAKLCQWKI |
2YDO Chain:A ((15-296)) | ----------------------------------AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAI-----STGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAK--GII----AICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVA---CLFEDVVPM-----NYMVYFNFFA--CVLVPLLLMLGVYLRIFLAARRQLKQMES----------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSH-APLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210382 for 1808 contacts (-116.4/contact) +
2D Compatibility (PS) -24169 + (NN) -10966 + (LL) 5212
1D Compatibility (HY) -28000 + (ID) 3300
Total energy: -271605.0 ( -150.22 by residue)
QMean score : 0.324
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