Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYFPILFFFFLKRCPSYTEPQNLTGVSEFLLLGLSEDPELQPVLAGLFLSMYLVTVL---GNLLIILAVSSDSHLHTPMYFFLSNLSLADIGFTSTTVPKMIVDMQTHSRVISYEGCLTQMSFFVLFACMDDMLLSVMAYDRFVAICHPLHYRIIMNPRLCGFLILLSFFISLLDSQLHNLIMLQLTCFKDVDISNFFC--DPSQLLHLRCSDTFINEMVIYFMGAIFGCLPISGILF----SYYKIVSPILRVPTSDGK-YKAFSTCGSHLAVVCL----FYGTGLVGYLSSAVLPSPRKSMVASVMYTVVTPMLNPFIYSLRNKDIQSALCRLHGRIIKSHHLHPFCYMG |
| 2VT4 Chain:A ((10-296)) | -------------------------------------------WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLP--IMMHW--WRDEDPQALKCYQDPG------CCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIR--------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPD--WLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -207219 for 1853 contacts (-111.8/contact) +
2D Compatibility (PS) -26018 + (NN) -4567 + (LL) 4644
1D Compatibility (HY) -20800 + (ID) 3800
Total energy: -257760.0 ( -139.10 by residue)
QMean score : 0.235
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