Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MERDKPVSVSEFLLLGLSRQPQQQHLLFVFFLSMYLATVLGNLLIILAISIDSRLHTPMYFFLSNMSFVDNCFSTTVPKMLANHILRTQTISFS----GCLMQMYFISELADMDNFLLAVMAYDRFVAVCRPLHYTAKMIHQLCALLVTGSWVVANSNALLHTLLMARLS---FCADNTIPHIFCDVTPLLKLSCSDTHLSEVMILTEAALVTITPFLCLLASYMHITCVVLR---------VPSTKGR--WKAFSTCGSHLAVVLLFYGTIMSP--------YFRTSSSHSAQRDIAAAVRFTVVTPVMNPLIYSLRNKDIKGALVKVVAVKFFSVQ |
| 3VG9 Chain:A ((14-303)) | -------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAAD-----IAVGVLAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVACLFEDVVPM-----------NYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VG9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206262 for 1898 contacts (-108.7/contact) +
2D Compatibility (PS) -25598 + (NN) -1635 + (LL) 3804
1D Compatibility (HY) -24800 + (ID) 3000
Total energy: -257491.0 ( -135.66 by residue)
QMean score : 0.225
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