Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQQNNSVPEFILLGLTQDPLRQKIVFVIFLIFYMGTVVGNMLIIVTIKSSRTLGSPMYFFLFYLSFADSCFSTSTAPRLIVDALSEKKIITYNECMTQVFALHLFGCMEIFVLILMAVDRYVAICKPL---RYPTIMSQQVCIILIVLAWIGSLIHSTAQIILALR-LP-----FCGPYLIDHYCCDLQPLLKLACMDTYMINLLLVSNSGAICSSSFMILIISYIVILHSLRNHSAKGK-----KKALSACTSHIIVVILFF--------GPCIFIYTRPPTTF-PMDKMVAVFYTIGTPFLNPLIYTLRNAEVKNAMRKLWHGKIISENKG |
| 3CAP Chain:A ((44-317)) | ---------------------------MFLLIMLGFPINFLTLYVTVQHKK-LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF----GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCG---IDYYTPHEETNNESFVIYMFVVHFII----------PLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -252695 for 1866 contacts (-135.4/contact) +
2D Compatibility (PS) -25859 + (NN) -9104 + (LL) 3520
1D Compatibility (HY) -26800 + (ID) 2750
Total energy: -313688.0 ( -168.11 by residue)
QMean score : 0.315
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