Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASRYVAVGMI-LSQTVVGVLGSFSVLLHYLSFYCTGCRL-RSTDLIVKHLIVANFLALRCKGVPQTMAAFGVRYFLNALGCKLVFYLHRVGRGVSIGTTCLLSV--FQVITVSSRKSRWAKLKEKAPKHVGFSVLLCWIVCMLVNIIFPMYVTGKWNYTNITVNEDLGYCSGGGNNKIAQTLRAMLLSFPD-VLCLGLMLWVSSSMVCILHRHKQRVQHIDRS------------------------------------------------------------------------------------------------------------------------------------------------------DLSPRASPENRATQSILILVSTFVSSYTLSCLFQVCMALLD-----------NPNSLLVNTSALMSVCFPTLSPFVLMSCDPSVYRFCFAWKR |
| 3ODU Chain:A ((48-492)) | ----KIFLPTIYSIIFLTGIVGNGLVILV----MGYQKKLRSMTDKYRLHLSVADLLFVI--TLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV-HATNSQ----RPRKLLAEKVVYVGVWIPALLLTIPDFIFANV-S-E-----ADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALT |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165094 for 1954 contacts (-84.5/contact) +
2D Compatibility (PS) -28541 + (NN) -7217 + (LL) 2052
1D Compatibility (HY) -14800 + (ID) 2000
Total energy: -215600.0 ( -110.34 by residue)
QMean score : ?
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