Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAVRLIPDNLNIKFSKYRKLTALISIILVIFSLFIVVLRGVNLGIDFTGGILMEIKSSSEDHAVLNILKENGFTIQSSKAGNNLVMYFREEGNEGKIKKIKSVLEEKLGSSISYRKIDYIGPRISSTQILEGILSMFIAIVGIFFYVWFRFNWQCGFGGTIALIHDVILTVGFVSLTGIKFNISSVAALLTVIGYSINNSVVIYDRIREYQKSGKNRQMSDIVDASIN--VTLFRTVLTSGTTLLATIPLTLICTDTVRDFSLIIFFGILIGTCSAIFISAPILTCKVLISRIAV |
2PJ2 Chain:A ((180-258)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IRNNLSSIKAYLTIHSYS---QMILYPYSYDYKLPENNAELNNLAKAAVKELATLYGTKYTYGPGATTIYPAAGGSDDWAYDQGIKYSFTFELRDKGRYGFILPESQIQATCEETML |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PJ2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21973 for 445 contacts (-49.4/contact) +
2D Compatibility (PS) -8161 + (NN) 413 + (LL) 13892
1D Compatibility (HY) -2400 + (ID) 1050
Total energy: -19279.0 ( -43.32 by residue)
QMean score : 0.042
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