Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWMAGMLYLPRLYVYHATVKPGSESDSLLQTMERRFLRYIINPAMLFSLSFGIALMIIREAYREGWFHVKALALFFMFGIHGLLAMHRKKFAMGSNEKNHVYFRVLNEMVTVLIIIIVIMIVVKPF-----
4G6V Chain:B ((2-104))
--------AIDLFCYL---------SIDRGAAESDLNKIRSNHSELFEGKFLI------SPVRDADFSLKEIAAE-----HGLVAESFFLVSLNDKNSADLIPIVSKILVDGFNGGAILILQDNEYRRTSL
General information:
TITO was launched using:
RESULT:
Template:
4G6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83074 for 706 contacts (-117.7/contact) +
2D Compatibility (PS) -10438 + (NN) -1923 + (LL) 2748
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -96387.0 ( -136.53 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_4G6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G6V-query.scw
PDB file :
Tito_Scwrl_4G6V.pdb
: