Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MILFSLLFSQSNTGARVILDKEIFYTELDGKMDLRFSYTFNKDSFN-----IKPKDKTSSYSYLRLFYLQRVYPNTQMGFNIKAE--VSNISNLKALDIEKLNMEEWYFIIKNQGLGSIEYGKRNLVSQSMLINTSKIYVAAGGANGYWANYANLLGNEKKDDGAGYDKDEVFWVKPSIYSNYSGLKLKLKQPVVSYISPEIYNFQLGLSYVPGKNNL---------QYNNLVASGLSYKNGLSDDISFTTTLT-----GEFARGDLADCTNKNPSNLQCHNQLLHWNFGLKLKFFNLDC--IFSYGNSGKSGKKL-DSEVSSTYYMNAGVAYRSDSRKLSLTYFSGGQDII---GKGINKLTSYALSLEYPLFMGTSYYFDIVKFNTEEPKVMNNNSGYILLAGLKLIF |
| 3VY8 Chain:X ((15-355)) | ------------------------QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGF---KGQEDLGNGMKAIWQLEQKASIAGT-NSGWGNRQSFIGLK-GGFGTVRAGNLNTVLKDSGD-NVNAW-ESGSN-T-----EDVL-------GLG-----T---IGR------VE---SREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENA---G--FFGQYAGSFAKYADLNTDAERVA-VNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGA--GKVEQTASMVGLRHKF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VY8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 23668 for 2422 contacts (9.8/contact) +
2D Compatibility (PS) -33014 + (NN) -1167 + (LL) 4516
1D Compatibility (HY) 3200 + (ID) 2550
Total energy: -5347.0 ( -2.21 by residue)
QMean score : 0.147
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