Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTD-LESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNS--EEKGTVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNN-GQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYNATK
3MDS Chain:A ((4-200))
--FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEFF----
General information:
TITO was launched using:
RESULT:
Template:
3MDS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75292 for 1532 contacts (-49.1/contact) +
2D Compatibility (PS) -20388 + (NN) -6503 + (LL) 532
1D Compatibility (HY) -22800 + (ID) 5450
Total energy: -129901.0 ( -84.79 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_3MDS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MDS-query.scw
PDB file :
Tito_Scwrl_3MDS.pdb
: