Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKF---DSTKGIGRTSSN-SYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDL---KYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYP----ALVRSGFNPEFLTYLSNEK--SNEKTQFEVTYTRNQDILKNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG |
| 3M4D Chain:A ((13-254)) | -----------------------------------------------------------------DIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYS-EEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYNSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDK-KVGWKVIFNNMVNQNWG--PYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRD----------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M4D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 8077 for 1415 contacts (5.7/contact) +
2D Compatibility (PS) -23779 + (NN) -2592 + (LL) 6444
1D Compatibility (HY) -16000 + (ID) 3400
Total energy: -31250.0 ( -22.08 by residue)
QMean score : 0.312
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