Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVVFLLLFMLGGLEAHSDYCSDHCEGTPDSRIPPMGFHFSFVHSVKYYLQDPQKR--DHKLEKCHKAFDSTLKVNFITKSFKKDCKHAQMALEQAQKETP
1LG4 Chain:A ((65-119))
-----------------------------------KLDIDFGA-EGNRYYEANYWQFPDGIHYNGCSEA-------NVTKEAFVTGCINATQAANQGEFQKP
General information:
TITO was launched using:
RESULT:
Template:
1LG4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3361 for 224 contacts (-15.0/contact) +
2D Compatibility (PS) -5396 + (NN) -1352 + (LL) 2668
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -9591.0 ( -42.82 by residue)
QMean score : 0.220
(partial model without unconserved sides chains):
PDB file :
Tito_1LG4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LG4-query.scw
PDB file :
Tito_Scwrl_1LG4.pdb
: