Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKIVQGALDTDKLLKDYQEEACTKNFGAFCVFVGIVREEG----NVQGLSFDIYEALLKTWFEKWRHQPKDLG--VVLKMAHSVGDVLIRHSSFLCVLMGANTKNALKLYEYFFKNFKRNAPIWKCYLSDNERIYAKKKDHLLKGSGLLA
2OMD Chain:A ((9-135))
-VYLGHEWFGAERILSEY---QVPEDCGAQVLFLGIPRNAPEDGGNIEALEYEAYPEMAIKEMEKIRQETIEKFGVKEVFIHHRLGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVPIWKKEIFK--------------------
General information:
TITO was launched using:
RESULT:
Template:
2OMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100112 for 877 contacts (-114.2/contact) +
2D Compatibility (PS) -13288 + (NN) -6357 + (LL) 1800
1D Compatibility (HY) -8400 + (ID) 1450
Total energy: -127807.0 ( -145.73 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_2OMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OMD-query.scw
PDB file :
Tito_Scwrl_2OMD.pdb
: