Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVSSINQFDSNLYGLLNAKSAPKEDLAPIEGAEKIEREKKDAPTENLPFNPDKRETYGFLVLELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPVNGLHKKAFQTFNATNHNAFLQRYQNAYNNPSSMDVVL
1F3M Chain:A ((29-69))
-----------------------------------------------------------------GMPEQWARLLQT-SNITKSEQKKNPQAVLDVLEFYNSKKTSNSQKYMSFTD-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1F3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4568 for 200 contacts (-22.8/contact) +
2D Compatibility (PS) -4347 + (NN) -1897 + (LL) 5808
1D Compatibility (HY) -2400 + (ID) 350
Total energy: -7754.0 ( -38.77 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_1F3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F3M-query.scw
PDB file :
Tito_Scwrl_1F3M.pdb
: