Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKKTKKNKEKKQALENPLK----GLYLSLRLKAFITDIFMIYTPMLYIMTYA--ILGSAKDFRENQSAIFLCLLFYALTHSFFIAFKSQSPGMRYARFKLVKNNGEKVDFFLALWRFVLWVLSMGLLVGFVAPFIFKFFLHDKFSSTHIEIIKEEI----
2E6Q Chain:A ((1-112))
-GSSGSSGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ-----------------------------------------DSGALVGFSCP--------GVQDSAALTIQESSGPSSG
General information:
TITO was launched using:
RESULT:
Template:
2E6Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59801 for 661 contacts (-90.5/contact) +
2D Compatibility (PS) -10459 + (NN) 8044 + (LL) 5048
1D Compatibility (HY) -1200 + (ID) 1050
Total energy: -59418.0 ( -89.89 by residue)
QMean score : -0.029
(partial model without unconserved sides chains):
PDB file :
Tito_2E6Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E6Q-query.scw
PDB file :
Tito_Scwrl_2E6Q.pdb
: