Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYPFNHKEFVAMMEQ----YNLKSNSITIPEHTILNDLVTENRDCVYLLKSGILAGYIDF-DNDKIYSIFTSNFFMGYYTIFDNSSLVLTYQTLTECELIIYKKKDIEYSLSLFPENFSFQYTIMRTIAKHGY----YKSLLQYRDKKDQLAFVFEMLVKILDIPVEDGVAVLPKSISTTVIKNYCTLSKAFFYSQLKELKEAGIISKVK-LQWRINM-EALSEKNNSIN
2FMY Chain:A ((9-218))
------TNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTE-RNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT-------HTRAFIQAMEDTTILYTDIRNFQNIVV---EFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLAEFLVQAAMDTGLKVP-QGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLKDLQKLKEFSS---
General information:
TITO was launched using:
RESULT:
Template:
2FMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113930 for 1393 contacts (-81.8/contact) +
2D Compatibility (PS) -21438 + (NN) -3288 + (LL) 760
1D Compatibility (HY) -8400 + (ID) 1550
Total energy: -147846.0 ( -106.13 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_2FMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FMY-query.scw
PDB file :
Tito_Scwrl_2FMY.pdb
: